../../config-custom.h:15:18: error: glib.h: No such file or directory
gcc `pkg-config --cflags --libs glib-2.0` file.c -o program
Your need the contents of pkg-config --libs --cflags glib-2.0 in your makefile. So your makefile should have this line in it somewhere:
CFLAGS=`pkg-config --cflags --libs glib-2.0`
I forget how to do this with autoconf. But I can look it up... If you need gtk, do the same thing, replacing glib-2.0 with gtk+-2.0.
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